miRBase entry: ppe-MIR482a

Stem-loop ppe-MIR482a


Accession
MI0021609
Description
Prunus persica ppe-MIR482a precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
2 open access papers mention ppe-MIR482a
(6 sentences)

Sequence

aagaggaaauggaaauuuuuGGGUGAGAGGUUGCCGGAAAGAauacauaauauucauccaaguuuugauauuaaauucUUUCCGAAACCUCCCAUUCCAAugauuuccagcuauuccuuu
.(((((((.((((((((.(((((((.((((((..((((((((((...((((((.((.........)))))))).)))))))))).)))))).)).))))).))))))))....)))))))

Structure
a       ---a        u     -  A      GC          aca      u  ucc 
 agaggaa    uggaaauu uuGGG UG GAGGUU  CGGAAAGAau   uaauau ca   a
 |||||||    |||||||| ||||| || ||||||  ||||||||||   |||||| ||   a
 uuuccuu    accuuuag AACCU AC CUCCAA  GCCUUUcuua   auuaua gu   g
-       aucg        u     U  C      -A          --a      -  uuu 


Annotation confidence Not enough data
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Comments
Gao et al. identified small RNAs by sequencing in Prunus mume [1]. The reads were mapped to the Prunus persica genome. This entry represents the Prunus persica sequence, but the evidence for mature RNA expression is from Prunus mume.

Genome context
chrG1: 30620009-30620128 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppe-MIR482a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR482a-5p

Accession MIMAT0031165
Description Prunus persica ppe-miR482a-5p mature miRNA
Sequence 21 - GGGUGAGAGGUUGCCGGAAAGA - 42
Evidence experimental
Illumina [2]

Mature ppe-miR482a-3p

Accession MIMAT0027272
Description Prunus persica ppe-miR482a-3p mature miRNA
Sequence 79 - UUUCCGAAACCUCCCAUUCCAA - 100
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 22863067
    High-throughput sequencing of small RNAs and analysis of differentially expressed microRNAs associated with pistil development in Japanese apricot
    Gao Z, Shi T, Luo X, Zhang Z, Zhuang W, Wang L
    BMC Genomics (2012) 13:371

  2. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149