Stem-loop sequence rno-mir-1306

Accession

MI0021537 (change log)

Description

Rattus norvegicus miR-1306 stem-loop

Gene family

MIPF0000531; mir-1306

Literature search

2 open access papers mention rno-mir-1306
(12 sentences)

Stem-loop

   a    -c       uccccu  a        guga   a 
5'  gucu  caccacc      gc aacgucca    ugc g
    ||||  |||||||      || ||||||||    |||  
3'  cagg  guggugg      cg uugcaggu    aug a
   a    ua       ---ucu  g        ---a   g 

Deep sequencing

2847 reads, 0 reads per million, 403 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr11: 86857633-86857705 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000063307 ; rno-mir-1306-201; exon 1

  ENSRNOT00000002581 ; Dgcr8-201; 3'UTR (exon 3)

Database links

• miRBase Tracker:MI0021537

Mature sequence rno-miR-1306-5p

• Accession: MIMAT0024851
• Sequence: 9 - ccaccuccccugcaaacgucca - 30
• Deep sequencing: 2443 reads, 394 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:rno-miR-1306-5p
  • miRDB:rno-miR-1306-5p

Mature sequence rno-miR-1306-3p

• Accession: MIMAT0024852
• Sequence: 48 - gacguuggcucugguggugaug - 69
• Deep sequencing: 402 reads, 199 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:rno-miR-1306-3p
  • miRDB:rno-miR-1306-3p

References

1. PMID:22470567 "Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation" Meng F, Hackenberg M, Li Z, Yan J, Chen T PLoS One. 7:e34394(2012).