Stem-loop sequence rno-mir-1843a

AccessionMI0021535 (change log)
Previous IDsrno-mir-1843
DescriptionRattus norvegicus miR-1843a stem-loop
Gene family MIPF0001119; mir-1843
Literature search

5 open access papers mention rno-mir-1843a
(14 sentences)

Stem-loop 
   a      cuacaugaa         -cu u   u       aau 
5'  gcgguc         uauggaggu   c guc gacuuag   a
    ||||||         |||||||||   | ||| |||||||   g
3'  ugucag         auaccucca   g uag cugaauc   u
   c      auuuucaac         cuu c   u       ggu
Get sequence
Deep sequencing
173962 reads, 55.9 reads per million, 497 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 103567572-103567661 [-]
sense
ENSRNOT00000006005 ; Dcaf5-201; intron 5
Database links

Mature sequence rno-miR-1843a-5p

Accession MIMAT0024847
Previous IDsrno-miR-1843-5p
Sequence

17 -  

uauggaggucucugucugacu

 - 37

Get sequence
Deep sequencing167179 reads, 497 experiments
Evidence experimental; Illumina [1-2]
Predicted targets

Mature sequence rno-miR-1843a-3p

Accession MIMAT0024848
Previous IDsrno-miR-1843-3p
Sequence

55 -  

ucugaucguucaccuccauaca

 - 76

Get sequence
Deep sequencing6721 reads, 432 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:22470567 "Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation" Meng F, Hackenberg M, Li Z, Yan J, Chen T PLoS One. 7:e34394(2012).
2
PMID:22605339 "Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum" Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T J Biol Chem. 287:24397-24411(2012).
3
PMID:22908386 "MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase" Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC J Biol Chem. 287:25312-25324(2012).