Stem-loop rno-mir-1839

Accession

MI0021533

Description

Rattus norvegicus rno-mir-1839 precursor miRNA

Gene family

MIPF0000702; mir-1839

Literature search

3 open access papers mention rno-mir-1839
(7 sentences)

Sequence

80706 reads, 114 reads per million, 494 experiments

gaaAAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauucaAGACCUACUUAUCUACCAACAG
.....(((((((((...((((((((..(.........)..))))))))..))))))))).....

Structure

gaaAA         AAC        uu gca 
     GGUAGAUAG   AGGUCUUG  u   a
     |||||||||   ||||||||  |   a
     CCAUCUAUU   UCCAGAac  a   a
GACAA         -CA        uu aau 

Annotation confidence Not enough data

Genome context

chr1: 143360224-143360287 [+]

Mature rno-miR-1839-5p

• Accession: MIMAT0024843
• Description: Rattus norvegicus rno-miR-1839-5p mature miRNA
• Sequence: 4 - AAGGUAGAUAGAACAGGUCUUG - 25
• Evidence: experimental ; Illumina [1-2]

Mature rno-miR-1839-3p

• Accession: MIMAT0024844
• Description: Rattus norvegicus rno-miR-1839-3p mature miRNA
• Sequence: 43 - AGACCUACUUAUCUACCAACAG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22470567
   Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation
   Meng F, Hackenberg M, Li Z, Yan J, Chen T
   PLoS One (2012) 7:e34394


2. PubMed ID: 22605339
   Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum
   "Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T"
   "J Biol Chem (2012) 287:24397-24411


3. PubMed ID: 22908386
   MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase
   "Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC"
   "J Biol Chem (2012) 287:25312-25324