Stem-loop sequence rno-mir-1839

AccessionMI0021533 (change log)
DescriptionRattus norvegicus miR-1839 stem-loop
Gene family MIPF0000702; mir-1839
Literature search

3 open access papers mention rno-mir-1839
(7 sentences)

Stem-loop 
   gaaaa         aac        uu gca 
5'      gguagauag   aggucuug  u   a
        |||||||||   ||||||||  |   a
3'      ccaucuauu   uccagaac  a   a
   gacaa         -ca        uu aau
Get sequence
Deep sequencing
91822 reads, 22.3 reads per million, 498 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr1: 143360224-143360287 [+]
intergenic
Database links

Mature sequence rno-miR-1839-5p

Accession MIMAT0024843
Sequence

4 -  

aagguagauagaacaggucuug

 - 25

Get sequence
Deep sequencing84414 reads, 498 experiments
Evidence experimental; Illumina [1-2]
Predicted targets

Mature sequence rno-miR-1839-3p

Accession MIMAT0024844
Sequence

43 -  

agaccuacuuaucuaccaacag

 - 64

Get sequence
Deep sequencing7407 reads, 444 experiments
Evidence experimental; Illumina [1]
Predicted targets

References

1
PMID:22470567 "Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation" Meng F, Hackenberg M, Li Z, Yan J, Chen T PLoS One. 7:e34394(2012).
2
PMID:22605339 "Limonoid compounds inhibit sphingomyelin biosynthesis by preventing CERT protein-dependent extraction of ceramides from the endoplasmic reticulum" Hullin-Matsuda F, Tomishige N, Sakai S, Ishitsuka R, Ishii K, Makino A, Greimel P, Abe M, Laviad EL, Lagarde M, Vidal H, Saito T, Osada H, Hanada K, Futerman AH, Kobayashi T J Biol Chem. 287:24397-24411(2012).
3
PMID:22908386 "MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase" Clokie SJ, Lau P, Kim HH, Coon SL, Klein DC J Biol Chem. 287:25312-25324(2012).