miRBase entry: hvu-MIR6213

Stem-loop hvu-MIR6213


Accession
MI0021531
Description
Hordeum vulgare hvu-MIR6213 precursor miRNA

Literature search
2 open access papers mention hvu-MIR6213
(2 sentences)

Sequence

gauuagucuugaggaugaucguuuggucaugcugggaaagacagaaacuuucugcuccggaaaagaauuuuuauuuuuuucuauaagagauuuugaguugauucuuuuugcugcagauugcuacacaaauucuucagacugucauaauuuuucagaauuuuugaaguaccagaguuaugcgaaacauACAGAUUGCUACAGACUGGUCugcuauuaac
(((((((((..((.((((((....)))))).)).(((..(.(((((...)))))))))((((((((((....))))))))))...((((((((((((.............(((.((((((.....)))..))).))).............))))))))))))...(((.(((...((((.....))))....))).))))))))))))..........

Structure
----------         ugaggaugaucguuuggucaugcugggaaagacagaaacuuucugcuccggaaaagaauuuuuauuuuuuucuauaagagauuuugaguugauucuuuuugcugcagauugcuacacaaauucuucagacugucauaauuuuucagaauuuuugaa   c   -agu    c 
          gauuagucu                                                                                                                                                            gua cag    uaug g
          |||||||||                                                                                                                                                            ||| |||    |||| a
          CUGGUCAGA                                                                                                                                                            CAU GUU    Auac a
caauuaucgu         ------------------------------------------------------------------------------------------------------------------------------------------------------------   C   AGAC    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR6213

Accession MIMAT0024841
Description Hordeum vulgare hvu-miR6213 mature miRNA
Sequence 188 - ACAGAUUGCUACAGACUGGUC - 208
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22489137
    Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
    Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
    Int J Mol Sci (2012) 13:2973-2984