miRBase entry: hvu-MIR5048b

Stem-loop hvu-MIR5048b


Accession
MI0021507
Description
Hordeum vulgare hvu-MIR5048b precursor miRNA
Gene family
MIPF0001453; MIR5048

Literature search
4 open access papers mention hvu-MIR5048b
(26 sentences)

Sequence

ucuaacaauaUAUUUGCAGGUUUUAGGUCUAAguggugaauaucgaucucugaauauauugauaaccuucacaaauuugcugauuauuuuguagagcuauuauugucccacaugcauauccaugacuaaaaaaagcaaaaaaguaauaaugggguguuguguucucacaaagaaagauggaaaaguuuaacaaaaacuugugaaggaagaugaaugcuuugauuaugcaugaauccauaaugauaaagugcuauugaaugaucaaguaauuuguaagguuuuuauuaucuucgcaagaguuguauuguuaauuuagaccuagacaugcaaguauauuucuagga
((((..((((((((((((.((((.((((((((((....((((.(((.(((((((.(((.(((.((((((.(((((((.(((((((((((.((((.(((((((((((....((((((((.((((.........................))))((((((((.((((((((..............(((((.....))))))))))..))).)).)))))).....)))))))).....))))))))..))).)))).)))))))).)))))))))))))))).))).))).)))...)))))))))))....)))))))))))))).))))))))))))..)))).

Structure
-    ac            G    U          ggug    u   u    ---   u   u   u      c       u   -        u    a   --        -ccca        uccaugacuaaaaaaagcaaaaaaguaauaaugg      -  g   --     aagaaagauggaaa     a 
 ucua  aauaUAUUUGCA GUUU AGGUCUAAgu    aaua cga cucu   gaa aua uga aaccuu acaaauu gcu gauuauuu guag gcu  auuauugu     caugcaua                                  gguguu gu uuc  ucaca              aguuu a
 ||||  |||||||||||| |||| ||||||||||    |||| ||| ||||   ||| ||| ||| |||||| ||||||| ||| |||||||| |||| |||  ||||||||     ||||||||                                  |||||| || |||  |||||              ||||| c
 ggau  uuauaugaacgu caga uccagauuua    uuau guu gaga   cuu uau auu uuggaa uguuuaa uga cuaguaag uauc uga  uaguaaua     guacguau                                  ucguaa ua aag  agugu              ucaaa a
a    cu            a    -          auug    -   -    acg   c   u   u      -       -   a        u    g   aa        ccuaa        -----------------------------uaguu      g  g   ga     --------------     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR5048b

Accession MIMAT0024817
Description Hordeum vulgare hvu-miR5048b mature miRNA
Sequence 11 - UAUUUGCAGGUUUUAGGUCUAA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22489137
    Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
    Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
    Int J Mol Sci (2012) 13:2973-2984