Stem-loop nta-MIR169r

Accession

MI0021373

Description

Nicotiana tabacum nta-MIR169r precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

4 open access papers mention nta-MIR169r
(15 sentences)

Sequence

gaguggauugCAGCCAAGGAUGACUUGCCGGgauguuguagucaaugcaacgacuuaucgguaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucuauaagauauauauauaauucgaggugaagucaguaauuguuucacaaauuacauccaguugaauugcucauaauuugucuagagagucauugcaugaagagguagcgagugaauugcagccaaggagacuugucaagauguugcagccaaugcaacgacuuaucggcaggucguccuuggcuacauuucacucucu
(((((((.((.((((((((((((((((((((...(((((.((....)).)))))...)))))))))))))))))))).)).))))))).(((((..((((((((((((((...(((((..(((.((((((((...((.....((((((........)))))).))...))))))))...)))...)))))..)))))).))))))))))))).((.(((((((.((.((((((((((((((((((((.(((((((.....))))))).)))...)))))))).))))))))).)).))))))).))

Structure

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------       u  C                    gau     a  c 
                                                                                                                                                                                                                          gagugga ug AGCCAAGGAUGACUUGCCGG   guugu gu a
                                                                                                                                                                                                                          ||||||| || ||||||||||||||||||||   ||||| ||  
                                                                                                                                                                                                                          cucauuu ac ucgguuccugcuggauggcu   cagca cg a
ucucucacuuuacaucgguuccugcuggacggcuauucagcaacguaaccgacguuguagaacuguucagaggaaccgacguuaagugagcgauggagaaguacguuacugagagaucuguuuaauacucguuaaguugaccuacauuaaacacuuuguuaaugacugaaguggagcuuaauauauauauagaauaucucggaauguacucgucuucu       u  a                    auu     a  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature nta-miR169r

• Accession: MIMAT0024683
• Description: Nicotiana tabacum nta-miR169r mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28