miRBase entry: nta-MIR169q

Stem-loop nta-MIR169q


Accession
MI0021372
Description
Nicotiana tabacum nta-MIR169q precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
4 open access papers mention nta-MIR169q
(15 sentences)

Sequence

gaguggauugCAGCCAAGGAUGACUUGCCGGgauguuguagucaaugcaacgacuuaucgguaggucguccuuggcuacauuuuacucucuucugcucauguaaggcucuauaagauauauauauaauucgaggugaagucaguaauuguuucacaaauuacauccuuuuuuaauugcucauaauuugucuagagagucauugcaugaaaaaguagcgagugaauugcagccaaggagacuugucaagauguugcagccaaugcaacgacuuaucggcaggucguccuuggcuacauuucacucucu
(((((((.((.((((((((((((((((((((..(((((((.....(((((((.(((...((((((((.(((((((((.((.(((((((.((.((..((((((((((((((...(((((.((..............((((...((((((........))))))...))))..............)).)))))..)))))).))))))))...)).)).))))))).)).)))))))))))))))))))).))))))).....))))))).....)))))))))))))))))))).)).)))))))...

Structure
---       u  C                    ---ga       gucaa       a   auc        g         a  u       u  u  -gc        -      aua     u  auauaauucgaggu    uca      guu 
   gagugga ug AGCCAAGGAUGACUUGCCGG     uguugua     ugcaacg cuu   gguagguc uccuuggcu ca uuuacuc cu cu   ucauguaa ggcucu   agaua au              gaag   guaauu   u
   ||||||| || ||||||||||||||||||||     |||||||     ||||||| |||   |||||||| ||||||||| || ||||||| || ||   |||||||| ||||||   ||||| ||              ||||   ||||||    
   cucacuu ac ucgguuccugcuggacggcu     gcaacgu     acguugu gaa   cuguucag aggaaccga gu aagugag ga ga   aguacguu cugaga   ucugu ua              uuuc   cauuaa   c
ucu       u  a                    auuca       aaccg       a   ---        -         c  u       c  u  aaa        a      -ga     u  auacucguuaauuu    cua      aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR169q

Accession MIMAT0024682
Description Nicotiana tabacum nta-miR169q mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28