miRBase entry: nta-MIR169m

Stem-loop nta-MIR169m


Accession
MI0021369
Description
Nicotiana tabacum nta-MIR169m precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
4 open access papers mention nta-MIR169m
(15 sentences)

Sequence

gaguggauugcagccaaggaugacuugccgagauguuguagccaaugcaacgacuuaucggcaggucguccuuggcuacauuucacucuuuucugcucauguaaggcucuguaagacgcauauauaguucgaggugaagucaguaauugcguuucacaaaucauauccaguugaauugaucuuaauuuguccaaagagucauugcaugaagagguagagaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagcuaaugcaacgacuuaucugcaggucguccuuggcuacauuuagcucu
((((.((.((.(((((((((((((((((.((...(((((.((....((.(((((...((((((((((((((((((((.((.(((((((((((((..((((((((((((((((.((((((((((..(.(((.....))).)..)))..))))))).))..((((..((.....))..))))..............)))))).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).))....)).)))))...)).))))))))))))))))).)).)).)))).

Structure
-    g  u  c                 c  gau     a  caau  a     uua                    a  u          -   gc        -      -------------------------------------  a       --   au g   g 
 gagu ga ug agccaaggaugacuugc ga   guugu gc    gc acgac   ucggcaggucguccuuggcu ca uucacucuuu ucu  ucauguaa ggcucu                                     gu agacgca  uau  a uuc a
 |||| || || ||||||||||||||||| ||   ||||| ||    || |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| ||||||                                     || |||||||  |||  | ||| g
 cucg uu ac ucgguuccugcuggacg cu   cagca cg    cg uguug   AGCCGUUCAGUAGGAACCGA gu aggugagaga gga  aguacguu cugaga                                     ca uuugcgu  aug  u aag g
u    a  u  a                 u  auu     a  uaau  a     uag                    C  u          u   ga        a      aaccuguuuaauucuaguuaaguugaccuauacuaaa  c       ua   ac g   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR169m

Accession MIMAT0024679
Description Nicotiana tabacum nta-miR169m mature miRNA
Sequence 229 - CAGCCAAGGAUGACUUGCCGA - 249
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28