miRBase entry: nta-MIR169b

Stem-loop nta-MIR169b


Accession
MI0021358
Description
Nicotiana tabacum nta-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
4 open access papers mention nta-MIR169b
(17 sentences)

Sequence

gaguagauugcagccaaggaugacuugccgagauguuguagcuaaugcaacgacuuaucggcaggucguccuuggcuacauuuuacucucuucugcucauguaagucucugaaaugcauauauauaauucagagguaaaguuaucacacaucacauccaguugaauugcucacaauuugucuagagagucauugcaugaagagguagggaguggauugCAGCCAAGGAUGACUUGCCGAgauguuguagccaaugcaaugacuuaucggcaggucguccuuggcuacauuuuacucucu
(((((((.((.((((((((((((((((((((...(((((.((....((.(((((...((((((((((((((((((((.((.(((((((((((((..(((((((((.((((.....(((......((((((((.((.....................))..)))))))).........)))....)))).).))))))))..))).)))))))))).)).))))))))))))))))))))...))))).))....)).)))))...)))))))))))))))))))).)).)))))))...

Structure
---       u  c                    gau     a  uaau  a     uua                    a  u          -   gc        - u    gaaau   ---uauaua        -a  uaaaguuau 
   gaguaga ug agccaaggaugacuugccga   guugu gc    gc acgac   ucggcaggucguccuuggcu ca uuuacucucu ucu  ucauguaa g cucu     gca         uaauucag  gg         c
   ||||||| || ||||||||||||||||||||   ||||| ||    || |||||   |||||||||||||||||||| || |||||||||| |||  |||||||| | ||||     |||         ||||||||  ||         a
   cucauuu ac ucgguuccugcuggacggcu   cagua cg    cg uguug   AGCCGUUCAGUAGGAACCGA gu aggugaggga gga  aguacguu c gaga     ugu         guuaaguu  cc         c
ucu       u  a                    auu     a  uaac  a     uag                    C  u          u   ga        a u    -gauc   uuaacacuc        ga  uacacuaca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR169b

Accession MIMAT0024668
Description Nicotiana tabacum nta-miR169b mature miRNA
Sequence 219 - CAGCCAAGGAUGACUUGCCGA - 239
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28