miRBase entry: nta-MIR168c

Stem-loop nta-MIR168c


Accession
MI0021354
Description
Nicotiana tabacum nta-MIR168c precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
3 open access papers mention nta-MIR168c
(3 sentences)

Sequence

ggucucucauUCGCUUGGUGCAGGUCGGGACcugccucgccggcgacaaugaugucagcugacggugacggcggcguaccgauaaauauacaugcuguuugggucccgccuugcaucaacugaaucggagacugc
(((((((.(((((.((((((((((.(((((((((((((((((((((((....)))).))...)))))).)))(((((..............)))))....)))))))).)))))))))).))))).)))))))..

Structure
--       c     C          U        ----------------------------   -      ---  -    a 
  ggucucu auUCG UUGGUGCAGG CGGGACcu                            gcc ucgccg   gc gaca u
  ||||||| ||||| |||||||||| ||||||||                            ||| ||||||   || ||||  
  ucagagg uaagu aacuacguuc gcccuggg                            cgg aguggc   cg cugu g
cg       c     c          c        uuugucguacauauaaauagccaugcgg   c      agu  a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR168c

Accession MIMAT0024664
Description Nicotiana tabacum nta-miR168c mature miRNA
Sequence 11 - UCGCUUGGUGCAGGUCGGGAC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28