miRBase entry: nta-MIR168a

Stem-loop nta-MIR168a


Accession
MI0021352
Description
Nicotiana tabacum nta-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
3 open access papers mention nta-MIR168a
(3 sentences)

Sequence

ugucucuaauUCGCUUGGUGCAGGUCGGGACuaauucgccgguggcggcggcggcaaucacaacggcggugauuguuauuaaauggagauuagauguacgaaguuaucaacauuuuuuguuuugcggcgaaauuugucccgccuugcaucaacugaauuggagacugc
.((((((((((((.((((((((((.((((((...(((((((...((....))(((((((((.......)))))))))...............((((........))))((((.....))))...)))))))....)))))).)))))))))).))))))))))))...

Structure
--u            C          U      -uaa       ------------------------------------guggcggcggc         aa 
   gucucuaauUCG UUGGUGCAGG CGGGAC    uucgccg                                               ggcaaucac  c
   |||||||||||| |||||||||| ||||||    |||||||                                               |||||||||  g
   cagagguuaagu aacuacguuc gcccug    aagcggc                                               uuguuagug  g
cgu            c          c      uuua       guuuuguuuuuuacaacuauugaagcauguagauuagagguaaauua         gc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR168a

Accession MIMAT0024662
Description Nicotiana tabacum nta-miR168a mature miRNA
Sequence 11 - UCGCUUGGUGCAGGUCGGGAC - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28