miRBase entry: nta-MIR156j

Stem-loop nta-MIR156j


Accession
MI0021328
Description
Nicotiana tabacum nta-MIR156j precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
7 open access papers mention nta-MIR156j
(22 sentences)

Sequence

ugacaauuguUGACAGAAGAUAGAGAGCACuaaugaugauaugcuaaguaaauguaggggcaaaagcaucucaauucauuugugcucucuaugcuucugucaucaccuucggcca
.......((.((((((((((((((((((((.((((((((.(((((...................))))).)))..))))).))))))))))).))))))))).))..........

Structure
---ugacaau  u         -           u     --   u     aaguaaau 
          ug UGACAGAAG AUAGAGAGCAC aauga  uga augcu        g
          || ||||||||| ||||||||||| |||||  ||| |||||        u
          ac acugucuuc uaucucucgug uuacu  acu uacga        a
accggcuucc  u         g           u     ua   c     aaacgggg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR156j

Accession MIMAT0024638
Description Nicotiana tabacum nta-miR156j mature miRNA
Sequence 11 - UGACAGAAGAUAGAGAGCAC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28