Stem-loop lus-MIR396d

Accession

MI0021257

Description

Linum usitatissimum lus-MIR396d precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

3 open access papers mention lus-MIR396d
(4 sentences)

Sequence

uggcuuucugaggguaucuUCCCACAGCUUUAUUGAACUGcugcuucuacugcaucagagaucucugguuuagccaugcaguucaagaaagcuguggaagaauacaagcagagcca
((((..((((...(((((((((.((((((((.(((((((((.(((........((((((....))))))..)))...))))))))).))))))))))))).))))...))))))))

Structure

    uu    agg    -     C        A         --u   ucuacugc      g 
uggc  ucug   guau cuUCC ACAGCUUU UUGAACUGc   gcu        aucaga a
||||  ||||   |||| ||||| |||||||| |||||||||   |||        ||||||  
accg  agac   caua gaagg ugucgaaa aacuugacg   cga        uggucu u
    --    gaa    a     -        g         uac   ------uu      c 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR396d

• Accession: MIMAT0027237
• Description: Linum usitatissimum lus-miR396d mature miRNA
• Sequence: 20 - UCCCACAGCUUUAUUGAACUG - 40
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161