miRBase entry: lus-MIR398c

Stem-loop lus-MIR398c


Accession
MI0021234
Description
Linum usitatissimum lus-MIR398c precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention lus-MIR398c
(13 sentences)

Sequence

ggcaagaggggugcaaccugaaaacacagacgacggauuuuagucgcuugguucgaguuaacuauacuuaucucgucucUGUGUUCUCAGGUCACCCCUccaggcc
(((..((((((((..((((((.((((((((.(((((((..((((.(((((...)))))..)))).....))).)))))))))))).))))))))))))))...)))

Structure
   -aa        ca      a        c    -   ---uu    -c     g 
ggc   gaggggug  accuga aacacaga gacg gau     uagu  gcuug  
|||   ||||||||  |||||| |||||||| |||| |||     ||||  ||||| u
ccg   cUCCCCAC  UGGACU UUGUGUcu cugc cua     auca  ugagc  
   gac        --      C        -    u   uucau    au     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR398c

Accession MIMAT0027214
Description Linum usitatissimum lus-miR398c mature miRNA
Sequence 80 - UGUGUUCUCAGGUCACCCCU - 99
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161