Stem-loop lus-MIR169k

Accession

MI0021229

Description

Linum usitatissimum lus-MIR169k precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

2 open access papers mention lus-MIR169k
(10 sentences)

Sequence

ggaaggaggguuuuacaugaagaaaagagcuuuuguuugcUAGCCAAGGAUGACUUGCCUGcuaugccacccugauuuuguggguucuagucuacaauuuuguggcauccaggcagucuccuugucuauccagacaggcccuuuuuuuucaugcuagaccuuuccaucc
(((.(((((((((..((((((((((((.(((..((((((.(((.((((((.((((.(((((..(((((((...((..(((((((......)))))))..))))))))).))))))))))))))).)))..))))))))).).)))))))))))..))))).)))).)))

Structure

   a    -     ua           - a   uu      -c   C      U    U     cu       ccu  uu       uu 
gga ggag gguuu  caugaagaaaa g gcu  uguuug  UAG CAAGGA GACU GCCUG  augccac   ga  uuguggg  c
||| |||| |||||  ||||||||||| | |||  ||||||  ||| |||||| |||| |||||  |||||||   ||  |||||||   
ccu ccuu ccaga  guacuuuuuuu c cgg  acagac  auc guuccu cuga cggac  uacggug   uu  aacaucu  u
   a    u     uc           u c   --      cu   u      -    -     -c       ---  uu       ga 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR169k

• Accession: MIMAT0027209
• Description: Linum usitatissimum lus-miR169k mature miRNA
• Sequence: 41 - UAGCCAAGGAUGACUUGCCUG - 61
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161