miRBase entry: lus-MIR396a

Stem-loop lus-MIR396a


Accession
MI0021227
Description
Linum usitatissimum lus-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention lus-MIR396a
(4 sentences)

Sequence

uggcucugcuuguguucUUCCACAGCUUUCUUGAACUGcauggcaaaaccagagaucucugaugcagcagcaguucaauaaagcugugggaagauacccgcagaaagcca
(((((((((..(((((.((((((((((((.(((((((((...(((....((((....)))).)))....))))))))).)))))))))))).)))))..)))))..))))

Structure
    --     uu     c            C         -aug   aaac    g 
uggc  ucugc  guguu UUCCACAGCUUU UUGAACUGc    gca    caga a
||||  |||||  ||||| |||||||||||| |||||||||    |||    ||||  
accg  agacg  cauag agggugucgaaa aacuugacg    cgu    gucu u
    aa     cc     a            u         acga   ---a    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR396a

Accession MIMAT0027207
Description Linum usitatissimum lus-miR396a mature miRNA
Sequence 18 - UUCCACAGCUUUCUUGAACUG - 38
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161