Stem-loop lus-MIR169j

Accession

MI0021220

Description

Linum usitatissimum lus-MIR169j precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

2 open access papers mention lus-MIR169j
(10 sentences)

Sequence

gagagcauaggccugauaugaagauggagagaccgugguuCAGCCAAGGAUGACUUGCCGGgcggcauccugcuccgauccgguccgaucauucucggcucgauccucggcaaguuauucuuggcuacauugcgcucacuuguucucauuucagaccucucuauguucuc
(((((((((((.((((.((((.((..(((.((.((((((..(((((((((((((((((((((.((((...))))..((((.((.((((......)))))).)))))))))))))))))))))))))..)))))).)).)))..)))))).)))).)))....))))))))

Structure

        ----   c    u    a  ug   a  c      uC                     cggcauccugcucc    c  u    uc 
gagagcau    agg cuga auga ga  gag ga cguggu  AGCCAAGGAUGACUUGCCGGg              gauc gg ccga  a
||||||||    ||| |||| |||| ||  ||| || ||||||  |||||||||||||||||||||              |||| || ||||   
cucuugua    ucc gacu uacu cu  uuc cu gcguua  ucgguucuuauugaacggcuc              cuag uc ggcu  u
        ucuc   a    u    -  ug   a  c      ca                     --------------    c  -    cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR169j

• Accession: MIMAT0027200
• Description: Linum usitatissimum lus-miR169j mature miRNA
• Sequence: 41 - CAGCCAAGGAUGACUUGCCGG - 61
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161