miRBase entry: lus-MIR169i

Stem-loop lus-MIR169i


Accession
MI0021219
Description
Linum usitatissimum lus-MIR169i precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
2 open access papers mention lus-MIR169i
(11 sentences)

Sequence

gugggguaguggauuucauggugggaugggggaguaggucUGAGCCAAGGAUGACUUGCCGccgcugaaaccacaauugcaugcuuugcuuucuugugucccaaacuguaugcuuugguccauugggcugggaaguuguccuuggcucuagcuuccucccucgccuauuuuccauguaagacuuuaccauccac
(((((((((.(..((.(((((((((.((((((((.((((..((((((((((((((((.(((((......((((.....((((((((((....(....)...))))..))))))..))))......))).)).))))))))))))))))..)))).))))))))))))....))))).))..).)))))..))))

Structure
    --     u ga  u     ----    a        u    cU                G  -   gcugaa    caauu      --    cuuu u 
gugg  gguag g  uu caugg    uggg ugggggag aggu  GAGCCAAGGAUGACUU CC Gcc      acca     gcaugc  uuug    c u
||||  ||||| |  || |||||    |||| |||||||| ||||  |||||||||||||||| || |||      ||||     ||||||  ||||    |  
cacc  ccauu c  aa guacc    aucc gcucccuc uucg  cucgguuccuguugaa gg cgg      uggu     cguaug  aaac    g g
    ua     u ag  u     uuuu    -        c    au                g  u   guuacc    ---uu      uc    -ccu u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR169i

Accession MIMAT0027199
Description Linum usitatissimum lus-miR169i mature miRNA
Sequence 41 - UGAGCCAAGGAUGACUUGCCG - 61
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161