Stem-loop lus-MIR171d

Accession

MI0021166

Description

Linum usitatissimum lus-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

3 open access papers mention lus-MIR171d
(6 sentences)

Sequence

gucugguguacgAGAUAUUGGUGCGGUUCAAUCagagagcacgucuccuacgcacaucgaaaugggggaugcuauucgauugagccgcgucaauaucccguguuccucac
....((..((((.((((((((((((((((((((.(((((((..(((((((((.....))...))))))))))).))))))))))))))))))))))).))))..))....

Structure

gucu  ug    A                    a   -    cg       ---  c 
    gg  uacg GAUAUUGGUGCGGUUCAAUC gag agca  ucuccua   cg a
    ||  |||| |||||||||||||||||||| ||| ||||  |||||||   || c
    cc  gugc cuauaacugcgccgaguuag cuu ucgu  agggggu   gc a
cacu  uu    c                    -   a    --       aaa  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature lus-miR171d

• Accession: MIMAT0027146
• Description: Linum usitatissimum lus-miR171d mature miRNA
• Sequence: 13 - AGAUAUUGGUGCGGUUCAAUC - 33
• Evidence: not_experimental

References

1. PubMed ID: 23291876
   Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
   "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
   "Planta (2013) 237:1149-1161