miRBase entry: lus-MIR171c

Stem-loop lus-MIR171c


Accession
MI0021160
Description
Linum usitatissimum lus-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
3 open access papers mention lus-MIR171c
(6 sentences)

Sequence

ugaaaggugaucacugaguuauuggcccgguucacucagauggaagaugccguuuaauuuucuuaauuauucagccuagcucauuuUGAUUGAGCCGUGCCAAUAUCucaaugcuccuuuca
(((((((....((.((((.(((((((.(((((((.(((((..((....((.(..(((((.....)))))..).)).....))..))))).))))))).))))))).)))).))..)))))))

Structure
       ugau  c    u       c       c     ug  -agau  c uu     u 
ugaaagg    ca ugag uauuggc cgguuca ucaga  ga     gc g  uaauu u
|||||||    || |||| ||||||| ||||||| |||||  ||     || |  ||||| c
acuuucc    gu acuC AUAACCG GCCGAGU AGUuu  cu     cg c  auuaa u
       --uc  a    U       U       U     ua  cgauc  a uu     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR171c

Accession MIMAT0027140
Description Linum usitatissimum lus-miR171c mature miRNA
Sequence 87 - UGAUUGAGCCGUGCCAAUAUC - 107
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161