miRBase entry: lus-MIR169c

Stem-loop lus-MIR169c


Accession
MI0021147
Description
Linum usitatissimum lus-MIR169c precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
2 open access papers mention lus-MIR169c
(10 sentences)

Sequence

agaaaagagguugcuaacaugaagagagaagccaauuguuuggUAGCCAAGGAUGACUUGCCUGcuccuagacauuucgauuuucgagguuuggaucggaaaucauuguuuagaacagguugucaggcagucaccuuggcuaacuugacaagcuucucucccucauguuagccccucauuuucu
((((((((((..((((((((((.(((((((((...(((((.(((((((((((.(((((.((((((.((((((((....(((((((((........)))))))))..))))).....)))..).)))))))))))))))))).))).))))))))))))))..)))))))))).)))).))))))

Structure
      -    uu          -a         caa     u   -        A     U     - -u   -----     uuuc         ggu 
agaaaa gagg  gcuaacauga  gagagaagc   uuguu ggU AGCCAAGG UGACU GCCUG c  ccu     agaca    gauuuucga   u
|||||| ||||  ||||||||||  |||||||||   ||||| ||| |||||||| ||||| ||||| |  |||     |||||    |||||||||    
ucuuuu cucc  cgauuguacu  cucucuucg   aacag uca ucgguucc acuga cggac g  gga     uuugu    cuaaaggcu   u
      a    -c          cc         ---     u   a        -     -     u uu   caaga     --ua         agg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR169c

Accession MIMAT0027127
Description Linum usitatissimum lus-miR169c mature miRNA
Sequence 44 - UAGCCAAGGAUGACUUGCCUG - 64
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161