miRBase entry: lus-MIR171a

Stem-loop lus-MIR171a


Accession
MI0021142
Description
Linum usitatissimum lus-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
3 open access papers mention lus-MIR171a
(6 sentences)

Sequence

gaaaggcgauauuggugggguucaauccgauaacggauuuuuacaucaaaauuaacagcaacagcucuauacccauucaucuuggugguuguuauauuauaguaaaauacgaucucAGAUUGAGCCGCGCCAAUAUCacuuuuc
((((((.((((((((((.(((((((((.((...((...((((((........(((((((..((.(..................).))))))))).......))))))..))...)).))))))))).)))))))))).))))))

Structure
      c          g         c  uaa  gau      aucaaaau       aa  g ucuauacc 
gaaagg gauauuggug gguucaauc ga   cg   uuuuac        uaacagc  ca c        c
|||||| |||||||||| ||||||||| ||   ||   ||||||        |||||||  || |         
cuuuuc CUAUAACCGC CCGAGUUAG cu   gc   aaaaug        auuguug  gu g        a
      a          G         A  cua  -au      -auauuau       --  g uucuacuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature lus-miR171a

Accession MIMAT0027122
Description Linum usitatissimum lus-miR171a mature miRNA
Sequence 117 - AGAUUGAGCCGCGCCAAUAUC - 137
Evidence not_experimental

References

  1. PubMed ID: 23291876
    Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
    "Barvkar VT, Pardeshi VC, Kale SM, Qiu S, Rollins M, Datla R, Gupta VS, Kadoo NY"
    "Planta (2013) 237:1149-1161