miRBase entry: bta-mir-6123

Stem-loop bta-mir-6123


Accession
MI0021141
Description
Bos taurus bta-mir-6123 precursor miRNA

Literature search
1 open access papers mention bta-mir-6123
(1 sentences)

Sequence

651 reads, 21 reads per million, 63 experiments
agccugcUGCCAAGCCCACGUUCAAAGGcuguuucuucaaaguuaauggugccgccuuugagcugggaagggaagcgggcag
.(((((((.((...((((.((((((((((.((.((............)).)).))))))))))))))...)).)))))))..

Structure
-a       G  AAG    C          u  u  uucaa 
  gccugcU CC   CCCA GUUCAAAGGc gu uc     a
  ||||||| ||   |||| |||||||||| || ||      
  cgggcga gg   gggu cgaguuuccg cg gg     g
ga       a  gaa    -          c  u  uaauu 


Annotation confidence Not enough data
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Genome context
chr13: 58332856-58332937 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-6123
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-6123

Accession MIMAT0024596
Description Bos taurus bta-miR-6123 mature miRNA
Sequence 8 - UGCCAAGCCCACGUUCAAAGG - 28
Evidence experimental
Illumina [1-3]

References

  1. PubMed ID: 21912509
    Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
    "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
    "Int J Biol Sci (2011) 7:1016-1026

  2. PubMed ID: 22298343
    Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
    Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
    J Cell Biochem (2012) 113:2098-2111

  3. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103