Stem-loop sequence bta-mir-2285f-2

Accession

MI0021129 (change log)

Description

Bos taurus miR-2285f-2 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2285f-2
(24 sentences)

Stem-loop

   uac                  a  ug            --u  a 
5'    uauuggguuggccagaaa uu  uucagguuuuuc   gu c
      |||||||||||||||||| ||  ||||||||||||   || a
3'    auaaccuaaccgguuuuu aa  aaguccaaaaag   cg a
   uau                  c  gu            uau  u 

Deep sequencing

14270 reads, 201 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr20: 21912834-21912922 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075E18D_9913
• miRBase Tracker:MI0021129

Mature sequence bta-miR-2285f

• Accession: MIMAT0024581
• Sequence: 54 - aaaaccugaaugaacuuuuugg - 75
• Deep sequencing: 28344 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285f

References

1. PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).