Stem-loop sequence bta-mir-2284y-1

Accession

MI0021125 (change log)

Description

Bos taurus miR-2284y-1 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284y-1
(33 sentences)

Stem-loop

   aauaaccccuguua       -    ac   cuugauc                  g  c   c   u  uu 
5'               aggccug caga  uug       uauuggguuggccaaaaa uu guu ggg uu  c
                 ||||||| ||||  |||       |||||||||||||||||| || ||| ||| ||   
3'               uucgggu gucu  aac       auaacccaaccgguuuuu aa caa ccc ga  c
   ------------cc       u    --   -------                  g  u   a   u  uu 

Deep sequencing

71138 reads, 427 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr11: 73372788-73372911 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000010310 ; EPT1-201; intron 1

Database links

• RNAcentral:URS000075BF69_9913
• miRBase Tracker:MI0021125

Mature sequence bta-miR-2284y

• Accession: MIMAT0024579
• Sequence: 52 - aaaaguucguucggguuuuuc - 72
• Deep sequencing: 491587 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284y

References

1. PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).
2. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).