Stem-loop sequence bta-mir-3613a

AccessionMI0021118 (change log)
Previous IDsbta-mir-3613
DescriptionBos taurus miR-3613 stem-loop
Gene family MIPF0001411; mir-3613
Literature search

1 open access papers mention bta-mir-3613a
(3 sentences)

Stem-loop 
   -gguug   u    uu    ua               g ugc 
5'       ggu ugga  guug  cuuuuuuuuuuguuc u   a
         ||| ||||  ||||  ||||||||||||||| |   u
3'       cca acuu  caac  gaaaaaaaaaacaag a   u
   acuucg   c    cc    cc               g uuu
Get sequence
Deep sequencing
351 reads, 0 reads per million, 65 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr12: 19607296-19607381 [-]
intergenic
Clustered miRNAs
< 10kb from bta-mir-3613a
bta-mir-3613bchr12: 19607312-19607366 [+]
bta-mir-3613achr12: 19607296-19607381 [-]
Database links

Mature sequence bta-miR-3613a

Accession MIMAT0024574
Previous IDsbta-miR-3613
Sequence

15 -  

uguuguacuuuuuuuuuuguuc

 - 36

Get sequence
Deep sequencing302 reads, 63 experiments
Evidence experimental; Illumina [1-2]
Predicted targets

References

1
PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).
2
PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).