miRBase entry: bta-mir-3120

Stem-loop bta-mir-3120


Accession
MI0021116
Description
Bos taurus bta-mir-3120 precursor miRNA
Gene family
MIPF0000062; mir-214


Sequence

5923 reads, 4 reads per million, 66 experiments
gucaugugacugccugucugugccugcuguacaggugagcggauguucugCACAGCAAGUGUAGACAGGCAgacacaugac
((((((((.((((((((((((((.((((((.((((...........)))).)))))).)))))))))))))).))))))))

Structure
        a              c      a    ugag 
gucaugug cugccugucugugc ugcugu cagg    c
|||||||| |||||||||||||| |||||| ||||    g
caguacac gACGGACAGAUGUG ACGACA gucu    g
        a              A      C    ugua 


Annotation confidence Not enough data
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Genome context
chr16: 40640371-40640451 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-3120

Accession MIMAT0024572
Description Bos taurus bta-miR-3120 mature miRNA
Sequence 51 - CACAGCAAGUGUAGACAGGCA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22298343
    Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
    Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA
    J Cell Biochem (2012) 113:2098-2111