Stem-loop cca-MIR396c

Accession

MI0021108

Description

Cynara cardunculus cca-MIR396c precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

3 open access papers mention cca-MIR396c
(3 sentences)

Sequence

gccauguuuuuccacagcuuucuugaacuuuaaaaauucauguguuaauuccguucucaagaauuccuuuucgagaauucacgugauuaaacgaagUUCAAGAAAGCUGUGGGAAAAcaugaca
..(((((((((((((((((((((((((((((......(((((((........((((((.((((....)))).)))))).)))))))......)))))))))))))))))))))))))))))...

Structure

-gc                             aaaaau       uuaauucc      a    u 
   cauguuuuuccacagcuuucuugaacuuu      ucaugug        guucuc agaa u
   |||||||||||||||||||||||||||||      |||||||        |||||| ||||  
   guacAAAAGGGUGUCGAAAGAACUUgaag      agugcac        uaagag uuuu c
aca                             caaauu       -------u      c    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR396c

• Accession: MIMAT0024561
• Description: Cynara cardunculus cca-miR396c mature miRNA
• Sequence: 97 - UUCAAGAAAGCUGUGGGAAAA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41