Stem-loop cca-MIR396a

Accession

MI0021083

Description

Cynara cardunculus cca-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

3 open access papers mention cca-MIR396a
(3 sentences)

Sequence

auguuuUUCCACAGCUUUCUUGAACUUuaaaaauucauguguuaauuccguucucaagaauuccuuuucgagaauucacgugauuaaacgaaGUUCAAGAAAGCUGUGGGAAAacauga
((((((((((((((((((((((((((((......(((((((........((((((.((((....)))).)))))).)))))))......))))))))))))))))))))))))))))..

Structure

--                            aaaaau       uuaauucc      a    u 
  auguuuUUCCACAGCUUUCUUGAACUUu      ucaugug        guucuc agaa u
  ||||||||||||||||||||||||||||      |||||||        |||||| ||||  
  uacaAAAGGGUGUCGAAAGAACUUGaag      agugcac        uaagag uuuu c
ag                            caaauu       -------u      c    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR396a-5p

• Accession: MIMAT0024529
• Description: Cynara cardunculus cca-miR396a-5p mature miRNA
• Sequence: 7 - UUCCACAGCUUUCUUGAACUU - 27
• Evidence: experimental ; Illumina [1]

Mature cca-miR396a-3p

• Accession: MIMAT0024530
• Description: Cynara cardunculus cca-miR396a-3p mature miRNA
• Sequence: 93 - GUUCAAGAAAGCUGUGGGAAA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41