miRBase entry: mes-MIR394a

Stem-loop mes-MIR394a


Accession
MI0020966
Description
Manihot esculenta mes-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention mes-MIR394a
(14 sentences)

Sequence

ucauguggguuuaacaaaggguuucuuacagaguuuaUUGGCAUUCUGUCCACCUCCcaucuguagaaaucugucucucucacgagcucacauggaggugggcauacugccaacugagcucuguuggucucucuuuguaaaacucucguga
(((((.((((((.((((((((...((.((((((((((((((((...(((((((((((....(((.((..((((.......)).))..))))).)))))))))))...)))))).)))))))))).))...)))))))).)))))).)))))

Structure
     u      a        uuu  u          -      UUC           cauc   a  aa  -  uc 
ucaug ggguuu acaaaggg   cu acagaguuua UUGGCA   UGUCCACCUCC    ugu ga  uc ug  u
||||| |||||| ||||||||   || |||||||||| ||||||   |||||||||||    ||| ||  || ||  c
agugc cucaaa uguuucuc   gg ugucucgagu aaccgu   acggguggagg    aca cu  ag ac  u
     u      a        ucu  u          c      cau           ---u   -  cg  c  uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold09683: 173393-173543 [+]

Database links

Mature mes-miR394a

Accession MIMAT0024417
Description Manihot esculenta mes-miR394a mature miRNA
Sequence 38 - UUGGCAUUCUGUCCACCUCC - 57
Evidence not_experimental

References

  1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
    "Amiteye S, Corral JM, Sharbel TF"
    African J Biotech. (2011) 10:2562-2573