miRBase entry: mes-MIR159a

Stem-loop mes-MIR159a


Accession
MI0020959
Description
Manihot esculenta mes-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
7 open access papers mention mes-MIR159a
(23 sentences)

Sequence

uggagcuccuugaaguccaauagaggaucuugcuggguagauugAGCUGCUGAGCUAUGGAUCCCacagcccuaucucauaauaaagacuuuagucuucuuggauaggcuuguggcuugcauaucucaggagcuucauuaccucuuauguuagauccuugUUUGGAUUGAAGGGAGCUCUA
(((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..)))))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))))

Structure
           ga       ua        u  ----u      auu     G     C    G UC      c      u  uaaua     u 
uggagcuccuu  aguccaa  gaggaucu gc     ggguag   gAGCU CUGAG UAUG A  CCacag ccuauc ca     aagac u
|||||||||||  |||||||  |||||||| ||     ||||||   ||||| ||||| |||| |  |||||| |||||| ||     |||||  
AUCUCGAGGGA  UUAGGUU  uuccuaga ug     uccauu   uucga gacuc auac u  gguguu ggauag gu     uucug u
           AG       Ug        u  uauuc      -ac     g     u    g uc      c      -  ---uc     a 


Annotation confidence Not enough data
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Genome context
scaffold03525: 998-1178 [-]

Database links

Mature mes-miR159a-3p

Accession MIMAT0024410
Description Manihot esculenta mes-miR159a-3p mature miRNA
Sequence 161 - UUUGGAUUGAAGGGAGCUCUA - 181
Evidence not_experimental

Mature mes-miR159a-5p

Accession MIMAT0037459
Description Manihot esculenta mes-miR159a-5p mature miRNA
Sequence 45 - AGCUGCUGAGCUAUGGAUCCC - 65
Evidence experimental
Illumina [2]

References

  1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
    "Amiteye S, Corral JM, Sharbel TF"
    African J Biotech. (2011) 10:2562-2573

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85