miRBase entry: ppy-mir-378e

Stem-loop ppy-mir-378e


Accession
MI0020957
Description
Pongo pygmaeus ppy-mir-378e precursor miRNA
Gene family
MIPF0000168; mir-378


Sequence

aaccuggcucugccugacuccagcguccaggccaggggcagacaguggacagagaacagugcccaagaccACUGGACUUGGAGUCAGGacaucguuuuaacagcuuua
.....(((..(((((((((((((.((((((.....(((((....((.........))..))))).......))))))))))))))))).))..)))............

Structure
-------aaccu   uc  -           c      --gccag     gaca  gga 
            ggc  ug ccugacuccag guccag       gggca    gu   c
            |||  || ||||||||||| ||||||       |||||    ||   a
            uug  ac GGACUGAGGUU CAGGUC       cccgu    ca   g
auuucgacaauu   cu  a           -      Accagaa     --ga  aga 


Annotation confidence Not enough data
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Genome context
chr5: 172723182-172723289 [+]

Database links

Mature ppy-miR-378e

Accession MIMAT0024409
Description Pongo pygmaeus ppy-miR-378e mature miRNA
Sequence 71 - ACUGGACUUGGAGUCAGG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116