Stem-loop ppy-mir-3174

Accession

MI0020955

Description

Pongo pygmaeus ppy-mir-3174 precursor miRNA

Gene family

MIPF0001569; mir-3174

Sequence

ccagcaucagcguuaccuggUAGUGAGUUAGAGAUGCAGAGCccugggcuccucagcaaaccuacuggaucugcauuuuaauucacacgcaugguaaugucuguaaagcacu
...((..((((((((((((((.(((((((.((((((((((.((.((((............))))..)).))))))))))))))))))).)).))))))).)))....))...

Structure

cca  --au   -       -  -  A       A          G  -c    cuccu 
   gc    cag cguuacc ug gU GUGAGUU GAGAUGCAGA Cc  uggg     c
   ||    ||| ||||||| || || ||||||| |||||||||| ||  ||||      
   cg    guc guaaugg ac ca cacuuaa uuuuacgucu gg  aucc     a
uca  aaau   u       u  g  -       -          a  uc    aaacg 

Annotation confidence Not enough data

Genome context

chr15: 86665366-86665477 [+]

Mature ppy-miR-3174

• Accession: MIMAT0024407
• Description: Pongo pygmaeus ppy-miR-3174 mature miRNA
• Sequence: 21 - UAGUGAGUUAGAGAUGCAGAGC - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116