Stem-loop ppy-mir-3154

Accession

MI0020950

Description

Pongo pygmaeus ppy-mir-3154 precursor miRNA

Gene family

MIPF0001387; mir-3154

Sequence

ggccggcccccuccucaggccccuccuucucagccccagcucccgcucaccccugccacgucaaaggaggCAGAAGGGGAGUUGGGAGCAGagaggggaccacgggcuggcu
(((((((((........((((((((..(((..((((((((((((.((.....(((((.(......)..))))).)))))))))))).))))))))))).))..)))))))))

Structure

         ccuccuca  -      cu   ca  -          g  caccc     -a gu 
ggccggccc        gg ccccuc  ucu  gc cccagcuccc cu     cugcc  c  c
|||||||||        || ||||||  |||  || |||||||||| ||     |||||  |   
ucggucggg        cc ggggag  aGA  CG GGGUUGAGGG GA     GACgg  g  a
         ------ca  a      --   --  A          -  ----A     ag aa 

Annotation confidence Not enough data

Genome context

chr9: 125181208-125181319 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-3154

Mature ppy-miR-3154

• Accession: MIMAT0024402
• Description: Pongo pygmaeus ppy-miR-3154 mature miRNA
• Sequence: 71 - CAGAAGGGGAGUUGGGAGCAG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116