Stem-loop ppy-mir-3188

Accession

MI0020949

Description

Pongo pygmaeus ppy-mir-3188 precursor miRNA

Gene family

MIPF0001488; mir-3188

Sequence

uggauaaauaacuccuuggcgccuccuguucugcugugccgccagcgccuccccuagcugcgcuuucuggAGAGGCUUUGUGCGGACUCGGggcuggaggccugguggggu
..........(((((((((.((((((.((((((..((.(((((((.(((((((..(((...)))....)).))))).))).)))))).)))))).)))))))))).)))))

Structure

uggauaaaua     -    c      u      cu  g    -   c     -  --cu   u 
          acucc uugg gccucc guucug  gu ccgc cag gccuc cc    agc  
          ||||| |||| |||||| ||||||  || |||| ||| ||||| ||    ||| g
          ugggg gguc cggagg cggGGC  CA GGCG GUU CGGAG gg    ucg  
----------     u    -      u      -U  -    U   U     A  ucuu   c 

Annotation confidence Not enough data

Genome context

chr19: 18693162-18693272 [+]

Mature ppy-miR-3188

• Accession: MIMAT0024401
• Description: Pongo pygmaeus ppy-miR-3188 mature miRNA
• Sequence: 71 - AGAGGCUUUGUGCGGACUCGG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116