Stem-loop ppy-mir-4427

Accession

MI0020948

Description

Pongo pygmaeus ppy-mir-4427 precursor miRNA

Gene family

MIPF0001640; mir-4427

Sequence

ccaguccccuauucacucugcuucacugaagccucuuggggcuuauucagacaaugguuucaucauuucgUCUGAAUAGAGUCUGAAGAGucuuuaguggaaguaugcac
..................(((((((((((((.(((((.((((((((((((((((((((...))))))..)))))))).)))))).))))).))))))).)))))).....

Structure

ccaguccccuauucacuc      -       c     g      -        --      u 
                  ugcuuc acugaag cucuu gggcuu auucagac  aauggu  
                  |||||| ||||||| ||||| |||||| ||||||||  |||||| u
                  augaag ugauuuc GAGAA UCUGAG UAAGUCUg  uuacua  
-------------cacgu      g       u     G      A        cu      c 

Annotation confidence Not enough data

Genome context

chr1: 16046427-16046536 [-]

Mature ppy-miR-4427

• Accession: MIMAT0024400
• Description: Pongo pygmaeus ppy-miR-4427 mature miRNA
• Sequence: 71 - UCUGAAUAGAGUCUGAAGAG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116