miRBase entry: ppy-mir-3170

Stem-loop ppy-mir-3170


Accession
MI0020945
Description
Pongo pygmaeus ppy-mir-3170 precursor miRNA
Gene family
MIPF0001637; mir-3170


Sequence

ccuuaugucaucugguaacaCUGGGGUUCUGAGACAGACAGuguuagcuccagaagcauugccugucuuagaaccccuauguuaccagacgacauaggagugaauaaaauc
.((((((((.((((((((((..(((((((((((((((.(((((((.........))))))).)))))))))))))))..)))))))))).)))))))).............

Structure
------------c        a          CU               A       agc 
             cuuauguc ucugguaaca  GGGGUUCUGAGACAG CAGuguu   u
             |||||||| ||||||||||  ||||||||||||||| |||||||   c
             ggauacag agaccauugu  ccccaagauucuguc guuacga   c
cuaaaauaaguga        c          au               c       aga 


Annotation confidence Not enough data
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Genome context
chr13: 100533086-100533196 [+]

Database links

Mature ppy-miR-3170

Accession MIMAT0024397
Description Pongo pygmaeus ppy-miR-3170 mature miRNA
Sequence 21 - CUGGGGUUCUGAGACAGACAG - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116