Stem-loop ppy-mir-3121

Accession

MI0020944

Description

Pongo pygmaeus ppy-mir-3121 precursor miRNA

Gene family

MIPF0001417; mir-3121

Sequence

aacaaccuugucuucuugcuucuuaaaugguuauguccuuugccuauucuauuuaagacacccuguaccuUAAAUAGAGUAGGCAAAGGACAgaaacauuuuaaguucucua
.....................((((((..(((.(((((((((((((((((((((((((((...)))..))))))))))))))))))))))))..)))..)))))).......

Structure

aacaaccuugucuucuugcuu      ug   -a                        --   c 
                     cuuaaa  guu  uguccuuugccuauucuauuuaag  aca  
                     ||||||  |||  ||||||||||||||||||||||||  ||| c
                     gaauuu  caa  ACAGGAAACGGAUGAGAUAAAUuc  ugu  
--------------aucucuu      ua   ag                        ca   c 

Annotation confidence Not enough data

Genome context

chr1: 70404275-70404386 [+]

Mature ppy-miR-3121

• Accession: MIMAT0024396
• Description: Pongo pygmaeus ppy-miR-3121 mature miRNA
• Sequence: 71 - UAAAUAGAGUAGGCAAAGGACA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116