miRBase entry: ppy-mir-548c

Stem-loop ppy-mir-548c


Accession
MI0020927
Description
Pongo pygmaeus ppy-mir-548c precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ppy-mir-548c
(2 sentences)

Sequence

uauugcuauuagguuggugcAAAAGUACUUGCGGAUUUUGcuuuacuuuuaauggcaaaaaccgcaauuaguuuugcuucaaccuaauagaugcaaaguuggcuacaacug
.....((((((((((((.((((((.((.((((((.(((((((...........))))))).)))))).)).)))))).))))))))))))......(((((....))))).

Structure
----------------uauug            u      G  C      A       uuac 
                     cuauuagguugg gcAAAA UA UUGCGG UUUUGcu    u
                     |||||||||||| |||||| || |||||| |||||||    u
                     gauaauccaacu cguuuu au aacgcc aaaacgg    u
gucaacaucgguugaaacgua            u      g  u      a       uaau 


Annotation confidence Not enough data
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Genome context
chr11: 5726325-5726435 [-]

Database links

Mature ppy-miR-548c

Accession MIMAT0024379
Description Pongo pygmaeus ppy-miR-548c mature miRNA
Sequence 21 - AAAAGUACUUGCGGAUUUUG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116