Stem-loop ppy-mir-3617

Accession

MI0020920

Description

Pongo pygmaeus ppy-mir-3617 precursor miRNA

Gene family

MIPF0001477; mir-3617

Sequence

ugucuuacucaaggucauagAAAGACAUAGUUGCAAGAUGGGauuagaaaccauaugucucaucagcacccuaugugcuuucucugcccugggagcacacuccauuuagcag
...........(((.((.((((((((((((.(((..((((((((............)))))))).)))..)))))).)))))).)).))).((((....)))).........

Structure

-----------ugucuuacuca   u  u      -      -U   AA        uagaa 
                      agg ca agAAAG ACAUAG  UGC  GAUGGGau     a
                      ||| || |||||| ||||||  |||  ||||||||      
                      ucc gu ucuuuc uguauc  acg  cuacucug     c
gacgauuuaccucacacgaggg   c  c      g      cc   -a        uauac 

Annotation confidence Not enough data

Genome context

chr20: 43287391-43287502 [-]

Mature ppy-miR-3617

• Accession: MIMAT0024372
• Description: Pongo pygmaeus ppy-miR-3617 mature miRNA
• Sequence: 21 - AAAGACAUAGUUGCAAGAUGGG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116