Stem-loop ppy-mir-548e

Accession

MI0020909

Description

Pongo pygmaeus ppy-mir-548e precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ppy-mir-548e
(2 sentences)

Sequence

ugugaucuauggcauauuuauuagguugguacaaaaguaaucucaguuuuugcuauuacguuuaaagucaAAAACGGUGACUACUUUUGCAccaaccugauagaagaau
((((........))))((((((((((((((.((((((((.((.(.(((((((((...........)).))))))).).)).)))))))).)))))))))))))).....

Structure

ugugaucuauggcaua              a        a  u a       -  auua 
                uuuauuagguuggu caaaagua uc c guuuuug cu    c
                |||||||||||||| |||||||| || | ||||||| ||    g
                agauaguccaaccA GUUUUCAU AG G CAAAAac ga    u
-----------uaaga              C        C  U G       u  aauu 

Annotation confidence Not enough data

Genome context

chr10: 110341475-110341583 [+]

Mature ppy-miR-548e

• Accession: MIMAT0024361
• Description: Pongo pygmaeus ppy-miR-548e mature miRNA
• Sequence: 71 - AAAACGGUGACUACUUUUGCA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116