miRBase entry: ggo-mir-18b

Stem-loop ggo-mir-18b

Accession

MI0020857

Description

Gorilla gorilla ggo-mir-18b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

uauaaugugucucuuguguUAAGGUGCAUCUAGUGCAGUuagugaagcagcuuagaaucuacugcccuaaaugccccuucuggcacaggcugccuaauauacagcauuu
((((.((.((..((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))..)).)).))))........

Structure

--------    a  u  cu         --   U    C   U     u  ugaagca 
        uaua ug gu  cuuguguUA  AGG GCAU UAG GCAGU ag       g
        |||| || ||  |||||||||  ||| |||| ||| ||||| ||        
        auau au cg  ggacacggu  ucc cgua auc cguca uc       c
uuuacgac    a  c  uc         cu   c    a   c     -  uaagauu

Annotation confidence Not enough data

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Genome context

chrX: 134207967-134208075 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ggo-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-18b

Accession	MIMAT0024309
Description	Gorilla gorilla ggo-miR-18b mature miRNA
Sequence	20 - UAAGGUGCAUCUAGUGCAGU - 39
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116