miRBase entry: ggo-mir-182

Stem-loop ggo-mir-182


Accession
MI0020846
Description
Gorilla gorilla ggo-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182


Sequence

gcugcuugccucccccuguuUUUGGCAAUGGUAGAACUCACAcuggugagguaacaggauccggugguucuagacuugccaacuauggggcgaggacucagccggcacccug
((((((.(((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).)))).)..)).))))......

Structure
------    -  -u -    c      uU       UGG      UCA      ugaggu 
      gcug cu  g ccuc cccugu  UUGGCAA   UAGAAC   CAcugg      a
      |||| ||  | |||| ||||||  |||||||   ||||||   ||||||       
      cggc ga  c ggag ggggua  aaccguu   aucuug   guggcc      a
guccca    c  cu a    c      uc       cag      ---      uaggac 


Annotation confidence Not enough data
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Genome context
chr7: 129144109-129144220 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ggo-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-182

Accession MIMAT0024298
Description Gorilla gorilla ggo-miR-182 mature miRNA
Sequence 21 - UUUGGCAAUGGUAGAACUCACA - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116