miRBase entry: ggo-mir-516b-1

Stem-loop ggo-mir-516b-1


Accession
MI0020840
Description
Gorilla gorilla ggo-mir-516b-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

gaauaucucaggcugugaccAUCUGGAGGUAAGAAGCACUUucuguuuugugaaagaaaagaaagugcuuccuuucagaggguuacucuuugagaaaagcaacguugaag
.....(((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))))...............

Structure
----------gaaua       cu      A        UAA            g    g 
               ucucagg  gugacc UCUGGAGG   GAAGCACUUucu uuuu u
               |||||||  |||||| ||||||||   |||||||||||| |||| g
               agaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
gaaguugcaacgaaa       cu      g        ---            a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 53080303-53080412 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ggo-mir-516b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-516b

Accession MIMAT0024292
Description Gorilla gorilla ggo-miR-516b mature miRNA
Sequence 21 - AUCUGGAGGUAAGAAGCACUU - 41
Evidence not_experimental

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116