Stem-loop ggo-mir-188

Accession

MI0020825

Description

Gorilla gorilla ggo-mir-188 precursor miRNA

Gene family

MIPF0000113; mir-188

Sequence

cuucccugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUGagcuuucugaaaaccccucccacaugcaggguuugcaggauggcgagccucagcuuuccuugcucucu
.......((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).))))...(((.......)))....

Structure

-------------cuucccu    -  uc   ca  UC         GU      -UGag u 
                    gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
                    |||| ||  |||  ||  |||||||||  ||||||     | u
                    cgag gg  agg  gu  gggacguac  ccuccc     g c
ucucucguuccuuucgacuc    c  -u   ac  uu         ac      caaaa u 

Annotation confidence Not enough data

Genome context

chrX: 50437431-50437541 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ggo-mir-188

Mature ggo-miR-188

• Accession: MIMAT0024277
• Description: Gorilla gorilla ggo-miR-188 mature miRNA
• Sequence: 21 - CAUCCCUUGCAUGGUGGAGGGUG - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116