miRBase entry: ggo-mir-654

Stem-loop ggo-mir-654


Accession
MI0020785
Description
Gorilla gorilla ggo-mir-654 precursor miRNA
Gene family
MIPF0000409; mir-654


Sequence

agguggggcugagcccuccaggguaaguggaaagaUGGUGGGCCGCAGAACAUGUGCugaguucgugccauaugucugcugaccaucaccuuuagaagccccuuuucgc
....((((((..((((....))))......((((.((((((.(.(((((.(((((((.........).))))))))))).).)))))).))))...)))))).......

Structure
---aggu      gagcccuccaggguaagugg    a      G C     A      - uga 
       ggggcu                    aaag UGGUGG C GCAGA CAUGUG C   g
       ||||||                    |||| |||||| | ||||| |||||| |   u
       ccccga                    uuuc acuacc g cgucu guauac g   u
cgcuuuu      -----------------aga    c      a u     -      c ugc 


Annotation confidence Not enough data
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Genome context
chr14: 85063234-85063342 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ggo-mir-654
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-654

Accession MIMAT0024238
Description Gorilla gorilla ggo-miR-654 mature miRNA
Sequence 36 - UGGUGGGCCGCAGAACAUGUGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116