miRBase entry: ggo-mir-542

Stem-loop ggo-mir-542


Accession
MI0020778
Description
Gorilla gorilla ggo-mir-542 precursor miRNA
Gene family
MIPF0000185; mir-542


Sequence

ggaucggucaaggaugcacagaucucagacaucucggggaucaucaugucacgagauaccagugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagccacucaucu
...........(((((......((((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...))))))))......)))))

Structure
ggaucggucaa     cacaga        auc    gg    uca         -a   c 
           ggaug      ucucagac   ucgg  auca   ugucacgag  uac a
           |||||      ||||||||   ||||  ||||   |||||||||  |||  
           ucuac      agggucug   AGUC  UAGU   ACAGUGUuc  gug g
-----------     ucaccg        gAA    AA    UAG         ac   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 134596750-134596861 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ggo-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-542

Accession MIMAT0024231
Description Gorilla gorilla ggo-miR-542 mature miRNA
Sequence 71 - UGUGACAGAUUGAUAACUGAAA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116