miRBase entry: ggo-mir-1228

Stem-loop ggo-mir-1228


Accession
MI0020776
Description
Gorilla gorilla ggo-mir-1228 precursor miRNA


Sequence

ugaugagcgugacugcccagGUGGGCGGGGGCAGGUGUGUGGugggugguggccugcggugagcagggcccucacaccugccucgccccccaggugugaaacgccccagau
......((((..(((((..((.((((((((.((((((((.((........(.(((((.....))))).))).))))))))))))))))))..)))).)..)))).......

Structure
-ugauga    ga -    ca  U        G        U  uggguggu g     g 
       gcgu  c ugcc  gG GGGCGGGG CAGGUGUG GG        g ccugc g
       ||||  | ||||  || |||||||| |||||||| ||        | ||||| u
       cgca  g gugg  cc cccgcucc guccacac cc        c ggacg g
uagaccc    aa u    ac  -        -        u  -------- g     a 


Annotation confidence Not enough data
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Genome context
chr12: 28919301-28919411 [+]

Database links

Mature ggo-miR-1228

Accession MIMAT0024229
Description Gorilla gorilla ggo-miR-1228 mature miRNA
Sequence 21 - GUGGGCGGGGGCAGGUGUGUGG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116