miRBase entry: ggo-mir-34b

Stem-loop ggo-mir-34b


Accession
MI0020773
Description
Gorilla gorilla ggo-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

gugcccggugcucgguuuguAGGCAGUGUCAUUAGCUGAUUGuacuguggugguuacaaucacuaacuccacugccaucaaaacaaggcacagcaucaccgccgcccggc
((((...(((((..((((...(((((((...((((.((((((((((.....)).))))))))))))...)))))))....))))..))))).))))....(((....)))

Structure
--------------    ccg     cg    -guA       UCA    C        -  g 
              gugc   gugcu  guuu    GGCAGUG   UUAG UGAUUGua cu u
              ||||   |||||  ||||    |||||||   |||| |||||||| || g
              uacg   cacgg  caaa    ccgucac   aauc acuaacau gg g
cggcccgccgccac    --a     aa    acua       cuc    -        u  u 


Annotation confidence Not enough data
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Genome context
chr11: 111454504-111454613 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-34b

Accession MIMAT0024226
Description Gorilla gorilla ggo-miR-34b mature miRNA
Sequence 21 - AGGCAGUGUCAUUAGCUGAUUG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116